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Gene Expression and Recombinant DNA Technology

Description: GATE LS Biochemistry Gene expression & Recombinant DNA Technology
Number of Questions: 20
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Tags: GATE LS Biochemistry Gene expression & Recombinant DNA Technology DNA Replication
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How many fragments will be generated if you digest a linear DNA molecule with a restriction enzyme having four recognition sites on the DNA?

  1. 3

  2. 6

  3. 5

  4. 4


Correct Option: C
Explanation:

A given restriction enzyme cuts DNA segments within a specific nucleotide sequence at restriction site. These recognition sequences are typically four, six, eight, ten, or twelve nucleotides long. Because there are only so many ways to arrange the four nucleotides which compose DNA (Adenine, Thymine, Guanine and Cytosine) into a four-to-twelve nucleotide sequence, recognition sequences tend to occur by chance in any long sequence. Five fragments will be generated if we digest a linear DNA molecule with a restriction enzyme having four recognition sites on the DNA.

In recombinant DNA technology, insertional inactivation leads to _____.

  1. inactivation of the host

  2. inactivation of the enzyme

  3. inactivation of the recombinant DNA

  4. inactivation of the host’s snRNA


Correct Option: B
Explanation:

Insertional inactivation is a technique of recombinant DNA technology used to select bacteria that carry recombinant plasmids, a fragment of foreign DNA is inserted into a restriction site within a gene for antibiotic resistance, thus causing that gene to become non functional, and hence there is an inactivation of the enzyme.

Adenosine deaminase(ADA) deficiency is a syndrome that is seen in children especially below 12 years. Which of the following can be considered as a permanent cure to this disorder?

  1. Bone marrow transplantation

  2. Enzyme replacement therapy

  3. Infusion of genetically engineered lymphocytes

  4. Introduction of gene isolated from bone marrow cells producing ADA into cells at early embryonic stages


Correct Option: D
Explanation:

Adenosine deaminase deficiency also known as ADA deficiency or ADA-SCID  is an autosomal recessive metabolic disorder that causes immunodeficiency. Introduction of gene isolated from bone marrow cells producing ADA into cells at early embryonic stages can be considered as a permanent cure to this disorder.

The introduction of DNA has developed tobacco plants resistant to nematodes. The DNA in the host cell produces which of the following?

  1. Both sense and antisense RNA

  2. A particular hormone

  3. An antifeedeant

  4. A toxic protein


Correct Option: A
Explanation:

Antisense RNA  is a single-stranded RNA which is complementary to a messenger RNA strand transcribed within a cell. In tobacco plants resistant to nematodes, the DNA produces both sense and antisense RNA.

Following are some statements about RNA interference. Which of them is/are correct? a. It is used to prevent infestation of unicellular organisms. b. It occurs in each and every prokaryote and a few eukaryotes as a means of cellular defense. c. There is a silencing of a specific mRNA molecule. d. Pest resistant plants are nowadays being produced by this method.

  1. Only a, c and d

  2. Only b, c, and d

  3. Only a and c

  4. Only c


Correct Option: A
Explanation:

RNA interference (RNAi) also known as the post transcriptional gene silencing (PTGS), happens to be  a biological process whereby the RNA molecules leads to the inhibition of gene expression. It occurs in most of the eukaryotes. There is a silencing of a specific mRNA molecule due to a complementary dsRNA molecule. Pest resistant plants are nowadays being produced by this method. 

For transformation, microparticles coated with DNA to be bombarded with gene gun are made up of

  1. silver or platinum

  2. platinum or zinc

  3. silicon or platinum

  4. gold or tungsten


Correct Option: D
Explanation:

A gene gun or a biolistic particle delivery system which was actually designed for plant transformation is a device for injecting cells with genetic information. The payload is an elemental particle of a heavy metal coated with plasmid DNA. Microparticles coated with DNA to be bombarded with gene gun are made up of gold or tungsten.

The Bt toxin is not toxic to human beings because

  1. the pro Bt toxin activation requires temperature above human body temperature

  2. the Bt toxin recognizes only insect-specific targets

  3. the Bt toxin formation from the pre Bt toxin requires pH lower than that present in human stomach

  4. conversion of pro Bt toxin to Bt toxin takes place only in highly alkaline conditions


Correct Option: D
Explanation:

Few isolates of B. thuringiensis produce a group of insecticidal small molecules called beta-exotoxin, commonly known as thuringiensin. The Bt toxin is not toxic to human beings because conversion of pro Bt toxin to Bt toxin takes place only in highly alkaline conditions.

Insecticidal protein is present in the protein crystals of Bacillus thuringiensis. This protein is actually

  1. binded with the epithelial cells of the midgut of the insect ultimately leading to its death

  2. coded by multiple genes which also include the gene cry

  3. activated the acidic pH of the insect foregut.

  4. cannot kill the carrier bacterium, since it is itself resistant to this toxin.


Correct Option: A
Explanation:

Bacillus thuringiensis form a solid protein crystal, the parasporal body, next to their endospores during spore formation. The parasporal body contains protein toxins that has been found to kill over 100 species of moths by dissolving in the alkaline gut of caterpillars and destroying the epithelium.

Which of the following is/are palindromic sequence(s)? a. HANNAH b. TESTREST c. SEXES d. MUNMUN

  1. Only a and c

  2. Only b and d

  3. Only a, b, and d

  4. All of these


Correct Option: A
Explanation:

A palindromic sequence is a nucleic acid sequence (DNA or RNA) that is the same whether read 5' (five-prime) to 3' (three prime) on one strand or 5' to 3' on the complementary strand with which it forms a double helix.

There are different types of DNA on the basis of their bases per turn, helical diameter, handedness of the turn of the helix, etc. These are A-DNA, B-DNA, C-DNA , D-DNA and Z-DNA found in the chromatin.

How many base pairs are there in B-DNA per turn of the helix?

  1. 10

  2. 12

  3. 8

  4. 9.33


Correct Option: A
Explanation:

10 : B-DNA contain 10 base pairs per turn of the helix. Z-DNA contain 12 bp per turn of the helix; D-DNA have 8 bp per turn of the helix;  C-DNA have 9.33 bp per turn of the helix; A-DNA have 11 bp per turn of the helix.

There are different types of DNA on the basis of their bases per turn, helical diameter, handedness of the turn of the helix, etc. These are A-DNA, B-DNA, C-DNA, D-DNA and Z-DNA found in the chromatin.

Only one type of DNA has left handedness turn of their helix. Name the DNA.

  1. Z-DNA

  2. B-DNA

  3. C-DNA

  4. D-DNA


Correct Option: A
Explanation:

Z-DNA: Only Z-DNA has left hand turn and having a helical diameter of 18 Angstrom. B-DNA has  righthanded turn and helical diameter of 20 Angstrom. C-DNA has righthanded turn and helical diameter of 19 Angstrom. D-DNA has righthanded turn.

Bt toxin gene has been cloned from the bacteria and expressed in plants to provide resistance to insects without the need for insecticides.

Select the resistant plants from the list below: a. Cotton b. Corn c. Rice d. Tomato e. Potato f. Soyabean

  1. Only a, b, c and d

  2. Only b, c, d and e

  3. Only a, b, e and f

  4. All of these


Correct Option: D
Explanation:

All the examples are resistant plants, which have been cloned from bacterial Bt toxin gene. This provides resistance to various insects, thus overcoming the necessity for the use of insecticides and subsequent health hazards.

Bt toxin gene has been cloned from the bacteria and expressed in plants to provide resistance to insects without the need for insecticides.

Crystals of Bt toxin produced by some bacteria are unable to kill the bacteria themselves because

  1. they are resistant to the toxin

  2. the toxin exists as toxoid

  3. the toxin exists as protoxins

  4. bacteria encloses the toxin in a special sac


Correct Option: C
Explanation:

The Bt toxin exists as an inactive protoxin, which needs digestion by an insect to be effective. There are various Bt toxins and each of this is specific to certain target insects. Crop plants have nowadays engineered to contain and express the genes for Bt toxin, which they produce in its active form.

If a person obtains transformants by inserting a recombinant DNA within the coding sequence of â-galactosidase, he or she will separate out recombinants from non-recombinants by observing

  1. non-recombinant colonies do not produce any colour, whereas recombinants form blue coloured colonies

  2. recombinant colonies do not produce any colour, whereas non-recombinants form blue coloured colonies

  3. recombinants and non-recombinants both produce blue coloured colonies

  4. no colonies are formed due to insertional inactivation


Correct Option: B
Explanation:

When a person obtains transformants by inserting a recombinant DNA within the coding sequence of â-galactosidase, the recombinant colonies do not produce any colour, whereas non-recombinants form blue coloured colonies. This observation helps in separating out the recombinants from the non-recombinant ones.

Genetic modification generates tailor-made plants. These plants are actually ___________.

  1. bioinsecticidal plants

  2. heat resistant plants

  3. rich in vitamin A

  4. all of the above


Correct Option: D
Explanation:

Meganucleases are considered to be the most specific naturally occurring restriction enzymes. Meganucleases are "molecular DNA scissors" that can be used to replace, eliminate or modify sequences in a highly targeted way. By modifying their recognition sequence through protein engineering, the targeted sequence can be changed. Meganucleases are used to modify all genome types, whether bacterial, plant or animal. Such modification generates tailor-made plants, which possess all the mentioned characteristics.

Eukaryotic genes do not function properly when cloned into bacterial cell because of

  1. high pH present in bacterial cell

  2. inability to excise introns and destruction by bacterial restriction enzymes

  3. inappropriate insertion of genes

  4. both 1 and 2


Correct Option: B
Explanation:

Eukaryotic genes do not function properly when cloned into bacterial cell, because of the inability of the bacterial genes to excise introns. Eukaryotic enzymes are often responsible for the destruction of the bacterial restriction enzymes as well.

A density gradient is produced by centrifuging a solution of caesium chloride (CsCl) at a very high speed, a concentration gradient is set up with CsCl density greater towards the bottom of the tube. How will the three macromolecules - DNA, protein and RNA distribute in this density gradient?

  1. Proteins float on top, DNA in middle whereas RNA forms a pellet at the bottom.

  2. DNA float on top, proteins in middle and RNA forms a pellet at bottom.

  3. Protein floats on top, whereas DNA and RNA forms a pellet at bottom.

  4. DNA and RNA floats on top whereas proteins form a pellet at bottom.


Correct Option: A
Explanation:

On centrifugation, macromolecules present in the CsCl solution will form bands at distinct point in the gradient. Position of band formation depends on the buoyant density. DNA has a buoyant density of about 1.7 g/ cm3, whereas protein molecules have a much lower buoyant densities and so float at the top of the tube whereas RNA forms a pellet at the bottom. 

A restriction endonuclease breaks the bond between the ________.

  1. base pair of DNA molecules

  2. base pairs of a DNA-RNA hybrid

  3. sugar and phosphate components of nucleic acid molecule

  4. exons and introns of a DNA molecule


Correct Option: C
Explanation:

A restriction endonuclease is an enzyme that cuts the DNA at or near a specific recognition nucleotide sequences known as restriction sites. It breaks the bond between the sugar and phosphate components of nucleic acid molecule.

Which of the following is not true for a plasmid?

  1. It is the extrachromosomal DNA in bacteria.

  2. It is not an integral part but inert genetic material.

  3. Host chromosome can be integrated with the plasmid.

  4. Transfer of plasmid can be done from cell to cell without killing the host.


Correct Option: B
Explanation:

A plasmid refers to a small DNA molecule that is physically separate from, as well as can replicate independently of, chromosomal DNA within a cell. Plasmids are most frequently found as small circular, double-stranded DNA molecules in bacteria. They are sometimes present in archaea and eukaryotic organisms.

Identify the correct match for the given columns:

 
Column I Column II
A. Rosie (i) Radioactive isotope
B. Golden rice (ii) Cry gene
C. Bt cotton (iii) vitamin A
D. DNA probe (iv) First transgenic cow
  1. A - iv, B - iii, C - ii, D - i

  2. A - i, B - iii, C - iv, D - ii

  3. A - iv, B - ii, C - i, D - iii

  4. A - ii, B - iii, C - iv, D - i


Correct Option: A
Explanation:

Rosie was the name of the first transgenic cow. Golden rice is an improved variety of genetically engineered rice with high content of Vitamin A. Bt cotton is transgenic cotton created by inserting a crystal protein gene (cry) from the soil bacterium Bacillus thuringiensis into the genome of various cotton cultivars. Radioactive isotopes often behave as DNA probes which are used to identify the various sequences of DNA.

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