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Genome Sequencing and Human Genome Project

Description: This test will help the students to revise their topics thoroughly and thus will boost their knowledge about the concern topic.
Number of Questions: 15
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Tags: DNA profiling Genome Sequencing and Human Genome Project Human Genome Project
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Which among the following statements regarding the differential extraction of DNA is incorrect?

  1. This method is used in the extraction of DNA from vaginal epithelial cells.

  2. Differential extraction disrupt the peptide bonds present in the coating of the sperm cell.

  3. Through this process, the DNA from two different types of cells can be extracted without mixing their contents.

  4. The first part of the differential lysis is carried out under mild conditions to gain the female DNA.

  5. Due to the high yield of DNA, the chance of a successful DNA-profile by downstream analysis is significantly increased.


Correct Option: B
Explanation:

Differential extraction uses a chemical called dithiothreitol (DTT) to disrupt the sulfur bonds in the coating of the sperm cell in order to extract its DNA.

Which of the following DNA profiling techniques is employed where a differential extraction of DNA is not possible?

  1. RFLP analysis (Restriction fragment length polymorphism)

  2. PCR analysis (polymerase chain reaction)

  3. STR analysis (Short tandem repeats)

  4. AmpFLP (Amplified fragment length polymorphism)

  5. Y-chromosome analysis


Correct Option: E
Explanation:

Recent innovations have included the creation of primers targeting polymorphic regions on the Y-chromosome (Y-STR), which allows resolution of a mixed DNA sample from a male and female or cases in which a differential extraction is not possible. Y-chromosomes are paternally inherited, so Y-STR analysis can help in the identification of paternally related males.

In humans the TYMP gene encodes the enzyme thymidine phosphorylase. The mitochondrial disease caused by mutations in the TYMP gene is _________________.

  1. mitochondrial neurogastrointestinal encephalopathy syndrome

  2. Leigh disease

  3. multiple sclerosis

  4. Wolff-Parkinson-White syndrome

  5. diabetes mellitus and deafness


Correct Option: A
Explanation:

Mitochondrial neurogastrointestinal encephalopathy syndrome is a rare autosomal recessive mitochondrial disease. Unlike typical mitochondrial diseases caused by mitochondrial DNA (mtDNA) mutations, MNGIE is caused by mutations in the TYMP gene, which encodes the enzyme thymidine phosphorylase.

Which among the following methods of sequencing DNA produces information about both identity and location of nucleotide sequences within the genome of an individual?

  1. Transposon sequencing

  2. Deep sequencing

  3. Exome sequencing

  4. Positional sequencing

  5. MicroRNA sequencing


Correct Option: D
Explanation:

Positional sequencing is a method of sequencing DNA that simultaneously generates information about both identity and location of nucleotide sequences. The method involves detecting the location of sequence specific recognition events (e.g., such as hybridization of probes of known sequence) on single DNA molecules.

Which among the whole-genome sequencing methods has the capability to target multiple genes simultaneously?

  1. Polymerase chain reaction

  2. Molecular inversion probe

  3. Hybrid capture

  4. In-solution capture

  5. Sequencing


Correct Option: A
Explanation:

Polymerase chain reaction (PCR) is a technology to amplify specific DNA sequences. It uses a single stranded piece of DNA as a start for DNA amplification. Uniplex PCR uses only one starting point (primer) for amplification and multiplex PCR uses multiple primers. This way multiple genes can be targeted simultaneously.

Zero-mode waveguides illuminates the process of translation. It is used by _______________ type of DNA sequencing.

  1. shotgun sequencing

  2. single cell sequencing

  3. single molecule fluorescent sequencing

  4. single molecule real time sequencing

  5. magnetic sequencing


Correct Option: D
Explanation:

Single molecule real time sequencing  is a parallelized single molecule DNA sequencing by synthesis technology. It utilizes the zero-mode waveguide (ZMW). A single DNA polymerase enzyme is affixed at the bottom of a ZMW with a single molecule of DNA as a template.

The mutation in the haemoglobin gene causes _________________.

  1. phenylketonuri

  2. cystic fibrosis

  3. sickle-cell disease

  4. Tay–Sachs disease

  5. haemophilia


Correct Option: C
Explanation:

Sickle-cell disease is a hereditary blood disorder, characterized by red blood cells that assume an abnormal, rigid sickle shape. Sickling decreases the cells' flexibility and results in a risk of various life-threatening complications. This sickling occurs because of a mutation in the haemoglobin gene.

Which among the following genetic diseases is not inherited?

  1. 47, XYY

  2. 47, XX, +21

  3. 47, XXY

  4. 45, X

  5. 1p36 deletion syndrome


Correct Option: A
Explanation:

47, XYY is not inherited but usually occurs as a random event during the formation of sperm cells. An incident in chromosome separation during anaphase II (of meiosis II) called nondisjunction can result in sperm cells with an extra copy of the Y-chromosome. If one of these atypical sperm cells contributes to the genetic makeup of a child, the child will have an extra Y-chromosome in each of the body's cells.

DNA microarray analysis is one of the fastest-growing new technologies in the field of genetic research. Which among the following statements does not characterizes the process of DNA microarray?

  1. DNA microarrays involves the hybridization between two DNA strands.

  2. DNA microarrays can be used to detect single nucleotide polymorphisms.

  3. DNA microarray experiment can accomplish many genetic tests in parallel.

  4. Probe-target hybridization is usually detected and quantified by detection of fluorophore-, platinum -, or chemiluminescence-labeled targets.

  5. A DNA microarray is a collection of microscopic DNA spots attached to a solid surface.


Correct Option: D
Explanation:

Probe-target hybridization is usually detected and quantified by detection of fluorophore-, silver-, or chemiluminescence-labeled targets to determine relative abundance of nucleic acid sequences in the target.

Which among the following DNA-modifying enzymes is regarded as a type of molecular motor?

  1. DNA ligases

  2. Topoisomerases

  3. Helicases

  4. Polymerases

  5. Nucleases


Correct Option: C
Explanation:

Helicases are proteins that are a type of molecular motor. They use the chemical energy in nucleoside triphosphates, predominantly ATP, to break hydrogen bonds between bases and unwind the DNA double helix into single strands. These enzymes are essential for most processes where enzymes need to access the DNA bases.

The method covalently linking the proteins of interest to the mRNAs encoding them is ____________________.

  1. in-vitro virus high-throughput sequencing

  2. RNAP sequencing

  3. transmission electron microscopy DNA sequencing

  4. microfluidic Sanger sequencing

  5. sequencing with mass spectrometry


Correct Option: A
Explanation:

A method has been developed to analyze full sets of protein interactions using a combination of 454 pyrosequencing and an in-vitro virus mRNA display method. Specifically, this method covalently links proteins of interest to the mRNAs encoding them, then detects the mRNA pieces using reverse transcription PCRs.

Which among the following has capacity to bind with the free intracellular calcium?

  1. Indo-1

  2. Fura-2

  3. Fluo-3

  4. Fluo-4

  5. JUNQ


Correct Option: B
Explanation:

Fura-2 is a ratiometric fluorescent dye which binds to free intracellular calcium. It was the first widely used dye for calcium imaging, and remains very popular.

Regarding the cancer genome sequencing, which among the following statements is incorrect?

  1. Cancer genome sequencing is the whole genome sequencing of a single, homogeneous or heterogeneous group of cancer cells.

  2. Cancer genome sequencing involves direct sequencing of primary tumor tissue.

  3. Cancer genome sequencing is not limited to WG sequencing.

  4. Cancers are homogeneous populations of cells.

  5. Cancer genome sequencing provides clinically relevant information in patients with rare tumor types.


Correct Option: D
Explanation:

Cancers are heterogeneous populations of cells. When sequence data is derived from a whole tumor, information about the differences in sequence and expression pattern between cells is lost. This difficulty can be ameliorated by single-cell analysis.

The DNA profiling method used extensively by the scientists to identify genes whose expression is altered in response to pathogens is ______________.

  1. GeneID

  2. comparative genomic hybridization

  3. gene expression profiling

  4. fusion genes microarray

  5. genome tiling arrays


Correct Option: C
Explanation:

The microarray-based gene expression profiling can be used to identify genes whose expression is changed in response to pathogens or other organisms by comparing gene expression in infected to that in uninfected cells or tissues.

Which among the following plays a crucial role in the third step of the urea cycle?

  1. TMC1

  2. END

  3. FXN

  4. GALT

  5. ASS


Correct Option: E
Explanation:

Argininosuccinate synthase (ASS) is an enzyme that catalyzes the synthesis of argininosuccinate from citrulline and aspartate. ASS is responsible for the third step of the urea cycle and one of the reactions of the citrulline-NO cycle.

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